Current Protein Benchmarks

[Dyyryath]

OK guys, until I have a chance to build a database driven tool for compiling user client benchmarks, let's use this thread for sharing our numbers.

Let's also try to keep discussion to a minimum for this section and make it just benchmarks. Feel free to create other threads for discussion of these benchmarks.

I'll start us out with a couple from my systems.

Keep in mind, these are all for the current CASP protein.

[Dyyryath]

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 13015 structures over 57391 seconds.

Structures Per Second: 0.23
Structures Per Minute: 13.61
Structures Per Hour: 816.40
Structures Per Day: 19593.60

Linux OS - Running Kernel Version 2.4.8-26mdk
Intel(R) Pentium(R) 4 CPU 1500MHz @ 1483mhz (256 KB cache)
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[MAD-ness]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 14050 structures over 65518 seconds.

Structures Per Second: 0.22
Structures Per Minute: 12.9
Structures Per Hour : 774
Structures Per Day : 18579

OS : Microsoft Windows XP MHz: 1202
CPU: AMD Athlon(tm) Processor
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Tbird with 512m SDRAM on KT133, default BIOS settings, my primary computer (i.e. used for 6-7 hours a day) and WinXP.

[Paratima]

I was interested in comparing Win98 to Win2K, with & without the -qt option, nothing else running. (This was done with Dyyryath's Perl script.) The results herewith:
AMD XP1700+ @ 1465 MHz Win98SE with ASCII art

Sample Size: 1690 structures over 6208 seconds.
Structures Per Second: 0.27
Structures Per Minute: 16.33
Structures Per Hour: 980.03
Structures Per Day: 23520.72
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AMD XP1700+ @ 1465 MHz Win98SE -qt

Sample Size: 2030 structures over 6195 seconds.
Structures Per Second: 0.33
Structures Per Minute: 19.66
Structures Per Hour: 1179.66
Structures Per Day: 28311.84
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AMD XP1800+ @ 1587 MHz Win2K with ASCII art

Sample Size: 1860 structures over 6152 seconds.
Structures Per Second: 0.30
Structures Per Minute: 18.14
Structures Per Hour: 1088.43
Structures Per Day: 26122.32
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AMD XP1800+ @ 1587 MHz Win2K -qt

Sample Size: 2140 structures over 6781 seconds.
Structures Per Second: 0.32
Structures Per Minute: 18.94
Structures Per Hour: 1136.12
Structures Per Day: 27266.88
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Under Win98, -qt adds almost 5,000/day. Under Win2K, -qt adds only about 1,000/day.

The Win98 box, running at a measured 1,465MHz beats the Win2K box, running at a measured 1,587MHz. The Win98 box was running out of a RAMdisk.

[MAD-ness]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 800 structures over 2682 seconds.

Structures Per Second: 0.31
Structures Per Minute: 18.4
Structures Per Hour : 1103
Structures Per Day : 26473

OS : Microsoft Windows XP MHz: 1526
CPU: AMD Athlon(tm) XP 1800+
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Default settings, box only runs winxp and DF. Nothing else. :) Results are a bit low, but it hadn't been running for long (the client had been, but not DFGUI I guess).

Would it be possible for you to bench that ramdisk system running the client from the HD, via another install or whatever means? Now that we can bench it will be interesting to see if ramdisk really is as useless as people claim (I don't know one way or the other, but am curious).

AthlonXP1700+ on WinXP with 512m DDR

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 18475 structures over 65565 seconds.

Structures Per Second: 0.28
Structures Per Minute: 16.9
Structures Per Hour : 1015
Structures Per Day : 24348

OS : Microsoft Windows XP MHz: 1468
CPU: AMD Athlon(tm) XP 1700+
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winxp, 512m DDR, KT266a default settings

[Paratima]

Would it be possible for you to bench that ramdisk system running the client from the HD, via another install or whatever means? Running as we speak. :)

I am one of the ones who thinks the RAMdisk is unnecessary for DF, so it'll be interesting. I like to run this test for >= 100 minutes. I'll post the results when it completes.

[IronBits]

W :D :D t! You guys are on the ball today :smoking:
:thumbs:

[Nitrousine]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 12725 structures over 64605 seconds.

Structures Per Second: 0.20
Structures Per Minute: 11.8
Structures Per Hour : 709
Structures Per Day : 17018

OS : Microsoft Windows 2000 MHz: 899
CPU: AMD Duron(tm) processor
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:cool:

[FoBoT]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 19340 structures over 77951 seconds.

Structures Per Second: 0.25
Structures Per Minute: 14.9
Structures Per Hour : 893
Structures Per Day : 21438

OS : Microsoft Windows XP MHz: 1198
CPU: AMD Athlon(tm) processor
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thats 200Mhz fsb and 256MB ddr 2100 ram

[Dyyryath]

SMP Celerons @ 400mhz, PC100 SDRAM


Processor 1:


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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 7145 structures over 115727 seconds.

Structures Per Second: 0.06
Structures Per Minute: 3.70
Structures Per Hour: 222.26
Structures Per Day: 5334.24

Linux OS - Running Kernel Version 2.4.18-6mdksmp
Celeron (Mendocino) @ 400mhz (128 KB cache)
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Processor 2:


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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 7259 structures over 115665 seconds.

Structures Per Second: 0.06
Structures Per Minute: 3.77
Structures Per Hour: 225.93
Structures Per Day: 5422.32

Linux OS - Running Kernel Version 2.4.18-6mdksmp
Celeron (Mendocino) @ 400mhz (128 KB cache)
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[Dyyryath]

Athlon Classic @ 1400mhz, PC2100 DDR RAM



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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 18100 structures over 73275 seconds.

Structures Per Second: 0.25
Structures Per Minute: 14.82
Structures Per Hour: 889.25
Structures Per Day: 21342.00

Linux OS - Running Kernel Version 2.4.18-6mdk
AMD Athlon(tm) processor @ 1400mhz (256 KB cache)
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[Paratima]

Same as above, sans RAMdisk

AMD XP1700+ @ 1465 MHz Win98SE -qt no RAMdisk

Sample Size: 1930 structures over 6175 seconds.

Structures Per Second: 0.31
Structures Per Minute: 18.75
Structures Per Hour: 1125.18
Structures Per Day: 27004.32
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There IS a difference, but it's less than 10%. I moved the DF directory to hdd and likewise the \temp & \tmp directories, so this is totally a hdd solution. Seemed like it was quite a bit slower at the start, which would also make sense. Once it gets all the working files into RAM buffers, it starts to catch up. I'm gonna let this one run overnight & see what it does long-term.

[Dyyryath]

Athlon XP 1800+ @ 1666mhz, PC133 SDRAM



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Distributed Folding Windows Benchmark.NET App V1.0

Sample Size: 29519 structures over 117194 seconds.

Structures Per Second 0.25
Structures Per Minute 15.11
Structures Per Hour 906.77
Structures Per Day 21762.56

Operating System is MS Windows XP
Processor is Athlon XP 1800+ @ 1662mhz
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[Kosh]

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 16400 structures over 56923 seconds.

Structures Per Second: 0.29
Structures Per Minute: 17.29
Structures Per Hour: 1037.19
Structures Per Day: 24892.56

Linux OS - Running Kernel Version 2.4.18
AMD Athlon(TM) XP1600+ @ 1410mhz (256 KB cache)
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[Angus]

Celeron 2 566 @708
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 12860 structures over 96087 seconds.

Structures Per Second: 0.13
Structures Per Minute: 8.0
Structures Per Hour : 482
Structures Per Day : 11571

OS : Windows 98 MHz: 708
CPU: GenuineIntel x86 Family 6 Model 8 Stepping 3
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FSB 83Mhz 128MB PC100 SDRAM

[MAD-ness]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 4615 structures over 26788 seconds.

Structures Per Second: 0.17
Structures Per Minute: 10.3
Structures Per Hour : 620
Structures Per Day : 14889

OS : Microsoft Windows 2000 MHz: 1003
CPU: GenuineIntel x86 Family 6 Model 8 Stepping 6
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 4650 structures over 33140 seconds.

Structures Per Second: 0.14
Structures Per Minute: 8.4
Structures Per Hour : 506
Structures Per Day : 12151

OS : Microsoft Windows XP MHz: 801
CPU: GenuineIntel x86 Family 6 Model 8 Stepping 3
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^^ AKA Intel PentiumIII

and

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 8100 structures over 50618 seconds.

Structures Per Second: 0.16
Structures Per Minute: 9.60
Structures Per Hour: 576.08
Structures Per Day: 13825.92

Linux OS - Running Kernel Version 2.4.17
Celeron (Coppermine) @ 908mhz (128 KB cache)
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 16750 structures over 59581 seconds.

Structures Per Second: 0.28
Structures Per Minute: 16.9
Structures Per Hour : 1014
Structures Per Day : 24327

OS : Microsoft Windows 2000 MHz: 1495
CPU: Intel(R) Pentium(R) 4 CPU 1.50GHz
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 8525 structures over 41364 seconds.

Structures Per Second: 0.21
Structures Per Minute: 12.4
Structures Per Hour : 742
Structures Per Day : 17813

OS : Microsoft Windows 2000 MHz: 1386
CPU: Intel(R) Celeron(TM) CPU 1200MHz
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XP1800+ 1533MHz on nForce single channel DDR conservative ram timings

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 2015 structures over 6079 seconds.

Structures Per Second: 0.33
Structures Per Minute: 19.9
Structures Per Hour : 1194
Structures Per Day : 28667

OS : Microsoft Windows 2000 MHz: 1536
CPU: AMD Athlon(TM) XP 1800+
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 150 structures over 1385 seconds.

Structures Per Second: 0.11
Structures Per Minute: 6.7
Structures Per Hour : 400
Structures Per Day : 9593

OS : Microsoft Windows 2000 MHz: 450
CPU: GenuineIntel x86 Family 6 Model 6 Stepping 5
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It's a Celeron 300@450Mhz - my power house

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 10 structures over 190 seconds.

Structures Per Second: 0.07
Structures Per Minute: 4.3
Structures Per Hour : 257
Structures Per Day : 6171

OS : Microsoft Windows 2000 MHz: 265
CPU: GenuineIntel x86 Family 6 Model 3 Stepping 4
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 30 structures over 110 seconds.

Structures Per Second: 0.27
Structures Per Minute: 16.4
Structures Per Hour : 982
Structures Per Day : 23564

OS : Microsoft Windows 2000 MHz: 1533
CPU: AMD Athlon(tm) XP 1800+
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 150 structures over 1385 seconds.

Structures Per Second: 0.11
Structures Per Minute: 6.7
Structures Per Hour : 400
Structures Per Day : 9593

OS : Microsoft Windows 2000 MHz: 450
CPU: GenuineIntel x86 Family 6 Model 6 Stepping 5
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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 9435 structures over 37484 seconds.

Structures Per Second: 0.25
Structures Per Minute: 15.1
Structures Per Hour : 907
Structures Per Day : 21763

OS : Microsoft Windows XP MHz: 1395
CPU: Intel(R) Pentium(R) 4 CPU 1400MHz
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Some assorted benches. Various people behind the submissions.

[Paratima]

SuSE Linux, Athlon Classic.

Distributed Folding Linux Benchmark Script V1.0

Sample Size: 11180 structures over 70280 seconds.

Structures Per Second: 0.16
Structures Per Minute: 9.54
Structures Per Hour: 572.68
Structures Per Day: 13744.32

Linux OS - Running Kernel Version 2.4.10-4GB
AMD Athlon(tm) Processor @ 848mhz (512 KB cache)

[Paratima]

AMD XP1800+ @ 1587 MHz Win2K DF running as a service

Distributed Folding Windows Benchmark Script V1.0

Sample Size: 2600 structures over 7919 seconds.

Structures Per Second: 0.33
Structures Per Minute: 19.70
Structures Per Hour: 1181.97
Structures Per Day: 28367.28
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[FoBoT]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 10995 structures over 51519 seconds.

Structures Per Second: 0.22
Structures Per Minute: 12.9
Structures Per Hour : 776
Structures Per Day : 18630

OS : Microsoft Windows XP MHz: 1000
CPU: AMD Athlon(tm) processor
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200 MHz fsb and 128MB ddr 2100 ram

[Chinasaur]

Struc per second .28
Struc per minute 16.93
Struc per hour 1016.03
Struc per day 24384.72

Linux OS - Running Kernel Version 2.4.9-31smp
AMD Athlon(tm) Processor @ 1533mhz (256KB cache) XP1800

Tyan S2460 mobo
RedHat 7.2

[ulv]

Tyan 2466- AMD XP1800 x 2- 512 Mb

CPU1:
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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 1070 structures over 4034 seconds.

Structures Per Second: 0.27
Structures Per Minute: 15.9
Structures Per Hour : 956
Structures Per Day : 22940

OS : Microsoft Windows 2000 MHz: 1533
CPU: AMD Athlon(tm) MP 1800+
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CPU2:
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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 1180 structures over 4189 seconds.

Structures Per Second: 0.28
Structures Per Minute: 16.9
Structures Per Hour : 1016
Structures Per Day : 24390

OS : Microsoft Windows 2000 MHz: 1533
CPU: AMD Athlon(tm) MP 1800+
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I think this is low, but Pelligrini brought this up some time ago. Single is better than dual on DF (did not see the same on G@H).
Ideas anyone?

[digital_me]

looks like i have the fastest system folding :cool:

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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 3250 structures over 7494 seconds.

Structures Per Second: 0.43
Structures Per Minute: 26.0
Structures Per Hour : 1562
Structures Per Day : 37490

OS : Microsoft Windows XP MHz: 2400
CPU: Intel(R) Pentium(R) 4 CPU 2.00GHz
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DM

[Paratima]

Dayum, DM! :scared:

Pls describe system in glowing detail.

[digital_me]

sure :)

P4 2.0A w/ 512kb L2 cache OCed @ 2400mhz (20 x 120mhz)
Asus P4T-E w/ ICS clk gen.
2 x 128mb Samsung PC800 RDRAM w/ 480mhz FSB (4 x 120mhz)

running WinXP Professional

DM

[jdhaenens]

ASUS a7m266-d Mobo with 1 GB ECC Registered DDR running with two AMD MP 2000's. (running as two services)

CPU0
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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 4550 structures over 17738 seconds.

Structures Per Second: 0.26
Structures Per Minute: 15.5
Structures Per Hour : 927
Structures Per Day : 22258

OS : Microsoft Windows XP MHz: 1680
CPU: AMD Athlon(TM) XP 1900+
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CPU0
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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 5100 structures over 17962 seconds.

Structures Per Second: 0.28
Structures Per Minute: 17.1
Structures Per Hour : 1024
Structures Per Day : 24587

OS : Microsoft Windows XP MHz: 1680
CPU: AMD Athlon(TM) XP 1900+
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Both processors are running at 57 C

[pointwood]

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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 3350 structures over 18645 seconds.

Structures Per Second: 0.18
Structures Per Minute: 10.9
Structures Per Hour : 653
Structures Per Day : 15672

OS : Microsoft Windows 2000 MHz: 996
CPU: Intel(R) Pentium(R) III Mobile CPU 1000MHz
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I'm using this laptop for work however.

[Angus]

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Distributed Folding Windows dfGUI v0.5 Benchmark

Sample Size: 87195 structures over 241554 seconds.

Structures Per Second: 0.36
Structures Per Minute: 21.7
Structures Per Hour : 1300
Structures Per Day : 31189

OS : Microsoft Windows 2000 MHz: 1993
CPU: Intel(R) Pentium(R) 4 CPU 2.00GHz
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512K L2 @ 2.0GHz
512M DDR @ 400Mhz
400MHz system bus

[Scoofy12]

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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 31000 structures over 146266 seconds.

Structures Per Second: 0.21
Structures Per Minute: 12.7
Structures Per Hour : 764
Structures Per Day : 18338

OS : Microsoft Windows XP MHz: 938
CPU: AMD Duron(tm) processor
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RAM is CL2.5 Crucial DDR @ 2x134 MHz on an Epox 8KHA mobo (Via KT266 chipset)

[digital_me]

why?

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Distributed Folding Windows dfGUI v0.6 Benchmark

Sample Size: 80549 structures over 110707 seconds.

Structures Per Second: 0.73
Structures Per Minute: 43.7
Structures Per Hour : 2619
Structures Per Day : 62864

OS : Microsoft Windows XP MHz: 2400
CPU: Intel(R) Pentium(R) 4 CPU 2.00GHz
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is there something wrong with this or my machine is just so damn fast?

DM

[MAD-ness]

Looks to be an error.

Do you have proteins left over from before the switch?

This 'could' give you a higher protein count, which would result in a higher average, though this would, of course, get closer and closer to your true production average as time went on.

I had like 200k/day on one of my machines using DFGUI when I loaded it up, I forgot I still had about 600k of orphaned proteins from a long ago protein switch. :(

I don't *think* this is your problem though.

Anything happen with your system clock?

Hrrmm...not sure what else.

[MAD-ness]

I just hand entered the benchmark results listed here into a table in a database for Access. I then used the "export" to HTML feature to get this simple but usable .html page. I can't attach HTML here and I don't have web hosting anywhere, so I am going to rename the file to a .txt for the moment so someone can atleast load it. I will try to get the html page put up somewhere here in a second.

Putting that stupid Yahoo user ID that I got for the old DF forums to good use:

http://www.geocities.com/m4dn3ss2000/DFBenchResultsTable.html

[MAD-ness]

dyy: would it be possible to get this thread reset or something tommorow so that submissions on the new protein are easier to get ahold of?

[Dyyryath]

This thread (like the proteins it was covering) is now finished. :D

See the new version of this thread, which is sticky at the top of the forum!