Ok, first I fixed the problem by downloading the whole new package, installing it and recreating the batch files. Seems to work ok.

error[000.000] taskapi.c line 571 args must start with - the offending arg #9 was g
fatal error [000.000] foldtrajlite.c line 4129 missin or invalid args run prog with no args

foldtrajlite -f protein -n native -gf -df -it -rt -g 0 -s 10000 -ut

This is the file I run to upload from nonet systems. Error happened during the auto update sequence.