Latest Protein Benchmarks

[guru]

Since I restarted folding I decided to post some benchmarks for the new protein.

Distributed Folding Windows dfGUI v1.7 Benchmark

Sample Size : 425 structures over 363 seconds.
Protein Size: 138AA

Structures Per Second: 1.18
Structures Per Minute: 70.8
Structures Per Hour : 4250
Structures Per Day : 102000

OS : Microsoft Windows XP MHz: 1586
CPU: AMD Athlon(tm) processor
Client Switches: -df -qt -rt -p -1

[guru]

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 1630 structures over 8006 seconds.
Protein Size: 138AA

Structures Per Second: 0.20
Structures Per Minute: 12.22
Structures Per Hour: 732.95
Structures Per Day: 17590.80

Solaris OS - Running Kernel Version 5.8
UltraSparc IIe @ 500 mhz ( 256K cache)
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[guru]

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 340 structures over 1172 seconds.
Protein Size: 138AA

Structures Per Second: 0.29
Structures Per Minute: 17.41
Structures Per Hour: 1044.37
Structures Per Day: 25064.88

Linux OS - Running Kernel Version 2.2.14
Celeron (Mendocino) @ 533mhz (128 KB cache)
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[Chinasaur]

Originally posted by guru
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Structures Per Second: 0.20
Structures Per Minute: 12.22
Structures Per Hour: 732.95
Structures Per Day: 17590.80

Solaris OS - Running Kernel Version 5.8
UltraSparc IIe @ 500 mhz ( 256K cache)
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Yikes :scared:

That's the SunBlade I was thinking of buying! :( Even at 500Mhz it's underperforming an XP by at least 20K structures a day.

:crazy:

[guru]

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Distributed Folding Windows dfGUI v1.7 Benchmark

Sample Size : 4570 structures over 2794 seconds.
Protein Size: 157AA

Structures Per Second: 1.64
Structures Per Minute: 98.1
Structures Per Hour : 5888
Structures Per Day : 141320

OS : Microsoft Windows XP MHz: 1586
CPU: AMD Athlon(tm) processor
Client Switches: -df -qt -rt -p -1
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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 220 structures over 601 seconds.
Protein Size: 157AA

Structures Per Second: 0.37
Structures Per Minute: 21.96
Structures Per Hour: 1317.80
Structures Per Day: 31627.20

Solaris OS - Running Kernel Version 5.8
@ 500 mhz ( 256K cache)
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[Chinasaur]

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 5695 structures over 3512 seconds.

Structures Per Second: 1.62
Structures Per Minute: 97.29
Structures Per Hour: 5837.70
Structures Per Day: 140104.80

Linux OS - Running Kernel Version 2.4.8-26mdk
AMD Athlon(tm) XP 1800+ @ 1534mhz (256 KB cache)

Mandrake 8.1 with -rt and 0 nice

[Wedge]

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Distributed Folding Windows dfGUI v1.7 Benchmark

Sample Size : 10020 structures over 7882 seconds.
Protein Size: 157AA

Structures Per Second: 1.27
Structures Per Minute: 76.3
Structures Per Hour : 4578
Structures Per Day : 109864

OS : Microsoft Windows XP MHz: 1379
CPU: AMD Athlon(tm) MP processor
Client Switches: -df -rt -p 20
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[guru]

Wedge , try using the -qt option in windows. It should run faster but you won't get any visual output. If you want to see the progress use DFGui.

[guru]

Chinasaur, My Sunblade 100 is a file server (420G) and it also doubles as my VPN system so it's not 100% DF. It's more of a desktop system that I'm running as a server. I need to upgrade the memory from 256M to 512M. That should help some.

guru

[guru]

here's my dual Celeron 366@550. This is the 157AA protein.

Proc 1
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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 5100 structures over 10025 seconds.

Structures Per Second: 0.51
Structures Per Minute: 30.52
Structures Per Hour: 1831.42
Structures Per Day: 43954.08

Linux OS - Running Kernel Version 2.4.18-6mdksmp
Celeron (Mendocino) @ 551mhz (128 KB cache)
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Proc 2

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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 5580 structures over 10004 seconds.

Structures Per Second: 0.56
Structures Per Minute: 33.47
Structures Per Hour: 2008.00
Structures Per Day: 48192.00

Linux OS - Running Kernel Version 2.4.18-6mdksmp
Celeron (Mendocino) @ 551mhz (128 KB cache)
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[Paratima]

I just can't seem to get this Thorobred running right:
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Wed Jul 31 21:43:41 EDT 2002
Distributed Folding Linux Benchmark Script V1.1
Sample Size: 41370 structures over 22009 seconds.
Structures Per Second: 1.88
Structures Per Minute: 112.78
Structures Per Hour: 6766.87
Structures Per Day: 162404.88
Linux OS - Running Kernel Version 2.4.10-4GB
AMD Athlon(tm) Processor @ 1869mhz (256 KB cache)
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Think I'm gonna go play (carefully!) with voltages... :p

[Kosh]

Everything on linux now, saw a 25% boost for my celeron :)

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Distributed Folding Linux Benchmark Script V1.0


Sample Size: 50950 structures over 36608 seconds.

Structures Per Second: 1.39
Structures Per Minute: 83.51
Structures Per Hour: 5010.38
Structures Per Day: 120249.12

Linux OS - Running Kernel Version 2.4.18
AMD Athlon(TM) XP1600+ @ 1410mhz (256 KB cache)
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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 7900 structures over 6621 seconds.

Structures Per Second: 1.19
Structures Per Minute: 71.59
Structures Per Hour: 4295.42
Structures Per Day: 103090.08

Linux OS - Running Kernel Version 2.4.18
Intel(R) Pentium(R) III CPU family 1266MHz @ 1273mhz (512 KB cache)
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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 34500 structures over 34822 seconds.

Structures Per Second: 0.99
Structures Per Minute: 59.45
Structures Per Hour: 3566.71
Structures Per Day: 85601.04

Linux OS - Running Kernel Version 2.4.18
Celeron (Coppermine) @ 1009mhz (128 KB cache)
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Distributed Folding Linux Benchmark Script V1.0

Sample Size: 29600 structures over 34767 seconds.

Structures Per Second: 0.85
Structures Per Minute: 51.08
Structures Per Hour: 3064.98
Structures Per Day: 73559.52

Linux OS - Running Kernel Version 2.4.18
AMD Duron(tm) Processor @ 807mhz (64 KB cache)
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[dtsang]

I benchmarked my Foldtrajlite client manually and found that it folds 33,000 proteins in one day.

I am running a Power Mac G4 with a PowerPC 7400 chip at 466 MHz. The -rt switch is on, using the latest CASP protein. I have 384 MB RAM.