Scoofy12
03-29-2004, 08:14 AM
I've not run DF on a linux desktop in a while (just a server) so I found something perplexing today:
i ran top, and saw this:
top - 08:08:10 up 5 days, 14:12, 3 users, load average: 2.22, 2.27, 2.38
Tasks: 105 total, 5 running, 100 sleeping, 0 stopped, 0 zombie
Cpu(s): 84.5% user, 6.6% system, 8.9% nice, 0.0% idle
Mem: 506652k total, 500060k used, 6592k free, 154368k buffers
Swap: 747012k total, 101432k used, 645580k free, 111752k cached
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
4933 xds 19 19 63132 53m 2252 R 8.9 10.8 309:09.28 foldtrajlite
2544 root 5 -10 160m 23m 7340 S 7.9 4.8 66:10.90 XFree86
..etc
I thought "hm, why is DF only taking 8.9% CPU and what is the 84.5% going to? I couldnt find any other process in top that looked to be consuming much CPU, so I ran ps:
USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND
root 1 0.0 0.0 1492 416 ? S Mar23 0:05 init [2]
root 2 0.0 0.0 0 0 ? SW Mar23 0:10 [keventd]
root 3 0.0 0.0 0 0 ? SWN Mar23 0:00 [ksoftirqd_CPU0]
root 4 0.0 0.0 0 0 ? SW Mar23 0:04 [kswapd]
root 5 0.0 0.0 0 0 ? SW Mar23 0:00 [bdflush]
root 6 0.0 0.0 0 0 ? SW Mar23 0:09 [kupdated]
root 8 0.0 0.0 0 0 ? SW Mar23 0:00 [khubd]
root 15 0.0 0.0 0 0 ? SW Mar23 0:00 [kreiserfsd]
root 172 0.0 0.1 1664 628 ? S Mar23 0:00 dhclient -pf /var/run/dhclient.eth0.pid eth0
root 242 0.0 0.0 2348 436 ? S Mar23 0:00 /sbin/klogd
root 250 0.0 0.0 1520 472 ? S Mar23 0:00 /usr/sbin/inetd
root 266 0.0 0.2 4660 1236 ? S Mar23 0:00 /usr/bin/X11/xfs -daemon
root 334 0.0 0.1 2700 952 ? S Mar23 0:00 /bin/bash /etc/rc2.d/S20xprint posix_sh_forced start
root 336 0.0 0.1 2700 952 ? S Mar23 0:00 /bin/bash /etc/rc2.d/S20xprint posix_sh_forced start
root 337 0.0 0.0 1484 348 ? S Mar23 0:00 tee -a /dev/null
root 338 0.0 0.0 1476 412 ? S Mar23 0:00 logger -p lpr.notice -t Xprt_64
root 342 0.0 0.1 4540 580 ? S Mar23 0:00 /usr/X11R6/bin/Xprt -ac -pn -nolisten tcp -audit 4 -fp /usr/X
daemon 346 0.0 0.1 1672 560 ? S Mar23 0:00 /usr/sbin/atd
root 349 0.0 0.1 1756 700 ? S Mar23 0:00 /usr/sbin/cron
root 367 0.0 0.0 1484 404 tty3 S Mar23 0:00 /sbin/getty 38400 tty3
root 368 0.0 0.0 1484 404 tty4 S Mar23 0:00 /sbin/getty 38400 tty4
root 369 0.0 0.0 1484 404 tty5 S Mar23 0:00 /sbin/getty 38400 tty5
root 370 0.0 0.0 1484 404 tty6 S Mar23 0:00 /sbin/getty 38400 tty6
root 2073 0.0 0.1 2492 620 ? S Mar24 0:00 kdm
root 2097 0.0 0.0 1484 404 tty1 S Mar24 0:00 /sbin/getty 38400 tty1
root 2098 0.0 0.2 2584 1052 tty2 S Mar24 0:00 -bash
xds 3459 0.0 0.2 5256 1508 ? S Mar24 0:00 /usr/lib/bonobo-activation/bonobo-activation-server --ac-acti
root 4559 0.2 0.1 2288 984 ? S Mar24 16:56 /bin/sh /usr/bin/x-session-manager
root 4608 0.0 0.8 12948 4340 ? S Mar24 0:00 dcopserver
root 2544 0.9 4.8 170672 24560 ? S< Mar24 66:11 /usr/X11R6/bin/X :0 -dpi 100 -nolisten tcp vt7 -auth /var/lib
root 4408 0.0 0.0 2672 480 ? S Mar24 0:00 ssh-agent
xds 6317 0.0 0.0 2672 352 ? S Mar24 0:00 ssh-agent
xds 8156 0.0 0.6 28740 3276 ? S Mar25 0:00 /usr/lib/evolution/1.4/evolution-wombat --oaf-activate-iid=OA
root 9170 0.0 0.1 3336 616 ? S Mar25 0:00 /usr/sbin/sshd
root 18329 0.0 0.1 1628 700 ? S Mar26 0:00 /sbin/syslogd -r
daemon 20289 0.0 0.0 1708 456 ? S Mar26 0:00 /sbin/portmap
xds 20974 0.0 0.2 3432 1160 ? S Mar26 0:00 /usr/sbin/famd -T 0
xds 21803 0.0 0.7 28156 3868 ? S Mar26 0:01 /usr/lib/gconf2/gconfd-2 13
root 22277 0.0 0.1 3028 884 ? S Mar26 0:00 -:0
xds 22296 0.0 0.1 2276 900 ? S Mar26 0:00 /bin/sh /usr/bin/kde3
xds 22338 0.0 0.0 2924 432 ? S Mar26 0:00 /usr/bin/ssh-agent kde3
xds 22350 0.0 1.3 20616 7076 ? S Mar26 0:00 kdeinit: Running...
xds 22353 0.0 1.4 20324 7340 ? S Mar26 0:00 kdeinit: dcopserver --nosid
xds 22356 0.0 1.6 21600 8120 ? S Mar26 0:00 kdeinit: klauncher
xds 22358 0.0 2.3 26672 11992 ? S Mar26 0:01 kdeinit: kded
xds 22372 0.0 1.9 27728 10040 ? S Mar26 0:01 kdeinit: knotify
xds 22373 0.0 0.0 1480 280 ? S Mar26 0:00 kwrapper ksmserver
xds 22375 0.0 1.8 22604 9336 ? S Mar26 0:01 kdeinit: ksmserver
xds 22377 0.0 2.1 24436 11080 ? S Mar26 0:04 kdeinit: kwin -session 117f000001000108013337000000025540000_
xds 22380 0.0 2.3 24484 11956 ? S Mar26 0:04 kdeinit: kdesktop
xds 22382 0.0 2.5 26616 13128 ? S Mar26 0:32 kdeinit: kicker
xds 22383 0.0 1.5 21044 7648 ? S Mar26 0:00 kdeinit: kio_file file /tmp/ksocket-xds/klauncherpcOPWa.slave
xds 22386 0.0 2.0 24296 10424 ? S Mar26 0:03 kdeinit: klipper
xds 22388 0.0 1.2 23464 6488 ? S Mar26 0:01 /usr/lib/evolution/1.4/evolution-alarm-notify --sm-config-pre
xds 22389 0.0 2.4 26976 12608 ? S Mar26 0:09 kdeinit: konsole -session 117f0000010001080141473000000559300
xds 22395 0.0 1.8 22016 9536 ? S Mar26 0:01 kalarmd --login
xds 22396 0.0 0.2 2580 1032 pts/0 S Mar26 0:00 /bin/bash
xds 22398 0.0 0.2 2588 1260 pts/1 S Mar26 0:00 /bin/bash
xds 22401 0.0 0.2 2580 1332 pts/2 S Mar26 0:00 /bin/bash
xds 22457 1.1 0.6 12308 3516 ? S Mar26 43:03 /usr/bin/artsd -F 10 -S 4096 -a oss -d -s 60 -m artsmessage -
xds 22464 0.0 3.6 54316 18544 ? S Mar26 0:30 evolution
xds 22467 0.0 3.6 54316 18544 ? S Mar26 0:00 evolution
xds 22468 0.0 3.6 54316 18544 ? S Mar26 0:01 evolution
xds 22469 0.0 3.6 54316 18544 ? S Mar26 0:00 evolution
xds 22505 0.0 1.1 20444 5880 ? S Mar26 0:05 xmms
xds 22506 0.0 1.1 20444 5880 ? S Mar26 0:00 xmms
xds 22507 0.0 1.1 20444 5880 ? S Mar26 0:00 xmms
xds 22509 0.0 1.1 20444 5880 ? S Mar26 0:00 xmms
xds 22517 0.0 5.5 53552 28164 ? S Mar26 1:03 /usr/lib/mozilla-firefox/firefox-bin
xds 22535 0.0 5.5 53552 28164 ? S Mar26 0:00 /usr/lib/mozilla-firefox/firefox-bin
xds 22536 0.0 5.5 53552 28164 ? S Mar26 0:00 /usr/lib/mozilla-firefox/firefox-bin
xds 22537 0.0 5.5 53552 28164 ? S Mar26 0:00 /usr/lib/mozilla-firefox/firefox-bin
xds 22574 0.0 1.9 22472 9752 ? S Mar26 0:06 appletproxy --configfile minipager_panelapplet_dtbyiugwgmag8k
xds 22621 0.0 3.6 54316 18544 ? S Mar26 0:00 evolution
root 10298 0.0 0.1 2596 1000 pts/0 S Mar26 0:00 bash
xds 20740 0.0 0.1 2276 900 ? S Mar26 0:00 /bin/sh /usr/bin/x-session-manager
xds 20788 0.0 0.1 2924 632 ? S Mar26 0:00 /usr/bin/ssh-agent x-session-manager
xds 20806 0.0 1.3 20600 6848 ? S Mar26 0:00 kdeinit: Running...
xds 20810 0.0 1.5 20284 7756 ? S Mar26 0:00 kdeinit: dcopserver --nosid
xds 20814 0.0 1.7 21540 8704 ? S Mar26 0:00 kdeinit: klauncher
xds 20816 0.0 2.0 22096 10468 ? S Mar26 0:00 kdeinit: kded
xds 20868 0.0 2.2 27368 11548 ? S Mar26 0:00 kdeinit: knotify
xds 20873 0.0 0.0 1480 280 ? S Mar26 0:00 kwrapper ksmserver
xds 20875 0.0 1.9 21348 9648 ? S Mar26 0:00 kdeinit: ksmserver
xds 20941 0.0 2.2 23528 11304 ? S Mar26 0:00 kdeinit: kwin -session 117f000001000108013337000000025540000_
xds 20945 0.0 1.7 24276 9056 ? S Mar26 0:01 kdeinit: kdesktop
xds 20951 0.0 1.9 25604 9704 ? S Mar26 0:04 kdeinit: kicker
xds 20956 0.0 1.3 20904 7068 ? S Mar26 0:00 kdeinit: kio_file file /tmp/ksocket-xds/klauncherlAZQub.slave
xds 20960 0.0 1.6 23116 8300 ? S Mar26 0:00 kdeinit: klipper
xds 20964 0.0 1.6 22752 8304 ? S Mar26 0:00 korgac --miniicon korganizer
xds 20983 0.0 1.6 21568 8352 ? S Mar26 0:00 kalarmd --login
xds 29687 0.0 1.5 21752 7892 ? S Mar26 0:00 /usr/bin/kdesktop_lock
xds 29690 0.0 13.5 74488 68584 ? SN Mar26 0:00 bsod -root -delay 20 -no-apple2
xds 4919 0.0 0.1 2660 712 ? S Mar26 3:04 SCREEN ./foldit
xds 4920 0.0 0.1 2280 864 pts/5 S Mar26 0:00 /bin/sh ./foldit
xds 4923 0.0 0.1 2280 864 pts/5 S Mar26 0:00 /bin/sh ./tmpfoldit.bat
xds 4929 0.0 0.1 2280 864 pts/5 S Mar26 0:00 /bin/sh ./foldit
xds 4933 8.6 10.8 78016 54832 pts/5 RN Mar26 309:19 ./foldtrajlite -f protein -n native -qf -it -rt
xds 20492 0.0 10.8 78016 54832 pts/5 SN Mar26 0:00 ./foldtrajlite -f protein -n native -qf -it -rt
root 16712 0.0 0.9 20044 5052 ? R 08:09 0:00 kpersonalizer --r --before-session
xds 16713 0.0 0.1 2480 832 pts/2 R 08:09 0:00 ps aux
i ran top, and saw this:
top - 08:08:10 up 5 days, 14:12, 3 users, load average: 2.22, 2.27, 2.38
Tasks: 105 total, 5 running, 100 sleeping, 0 stopped, 0 zombie
Cpu(s): 84.5% user, 6.6% system, 8.9% nice, 0.0% idle
Mem: 506652k total, 500060k used, 6592k free, 154368k buffers
Swap: 747012k total, 101432k used, 645580k free, 111752k cached
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
4933 xds 19 19 63132 53m 2252 R 8.9 10.8 309:09.28 foldtrajlite
2544 root 5 -10 160m 23m 7340 S 7.9 4.8 66:10.90 XFree86
..etc
I thought "hm, why is DF only taking 8.9% CPU and what is the 84.5% going to? I couldnt find any other process in top that looked to be consuming much CPU, so I ran ps:
USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND
root 1 0.0 0.0 1492 416 ? S Mar23 0:05 init [2]
root 2 0.0 0.0 0 0 ? SW Mar23 0:10 [keventd]
root 3 0.0 0.0 0 0 ? SWN Mar23 0:00 [ksoftirqd_CPU0]
root 4 0.0 0.0 0 0 ? SW Mar23 0:04 [kswapd]
root 5 0.0 0.0 0 0 ? SW Mar23 0:00 [bdflush]
root 6 0.0 0.0 0 0 ? SW Mar23 0:09 [kupdated]
root 8 0.0 0.0 0 0 ? SW Mar23 0:00 [khubd]
root 15 0.0 0.0 0 0 ? SW Mar23 0:00 [kreiserfsd]
root 172 0.0 0.1 1664 628 ? S Mar23 0:00 dhclient -pf /var/run/dhclient.eth0.pid eth0
root 242 0.0 0.0 2348 436 ? S Mar23 0:00 /sbin/klogd
root 250 0.0 0.0 1520 472 ? S Mar23 0:00 /usr/sbin/inetd
root 266 0.0 0.2 4660 1236 ? S Mar23 0:00 /usr/bin/X11/xfs -daemon
root 334 0.0 0.1 2700 952 ? S Mar23 0:00 /bin/bash /etc/rc2.d/S20xprint posix_sh_forced start
root 336 0.0 0.1 2700 952 ? S Mar23 0:00 /bin/bash /etc/rc2.d/S20xprint posix_sh_forced start
root 337 0.0 0.0 1484 348 ? S Mar23 0:00 tee -a /dev/null
root 338 0.0 0.0 1476 412 ? S Mar23 0:00 logger -p lpr.notice -t Xprt_64
root 342 0.0 0.1 4540 580 ? S Mar23 0:00 /usr/X11R6/bin/Xprt -ac -pn -nolisten tcp -audit 4 -fp /usr/X
daemon 346 0.0 0.1 1672 560 ? S Mar23 0:00 /usr/sbin/atd
root 349 0.0 0.1 1756 700 ? S Mar23 0:00 /usr/sbin/cron
root 367 0.0 0.0 1484 404 tty3 S Mar23 0:00 /sbin/getty 38400 tty3
root 368 0.0 0.0 1484 404 tty4 S Mar23 0:00 /sbin/getty 38400 tty4
root 369 0.0 0.0 1484 404 tty5 S Mar23 0:00 /sbin/getty 38400 tty5
root 370 0.0 0.0 1484 404 tty6 S Mar23 0:00 /sbin/getty 38400 tty6
root 2073 0.0 0.1 2492 620 ? S Mar24 0:00 kdm
root 2097 0.0 0.0 1484 404 tty1 S Mar24 0:00 /sbin/getty 38400 tty1
root 2098 0.0 0.2 2584 1052 tty2 S Mar24 0:00 -bash
xds 3459 0.0 0.2 5256 1508 ? S Mar24 0:00 /usr/lib/bonobo-activation/bonobo-activation-server --ac-acti
root 4559 0.2 0.1 2288 984 ? S Mar24 16:56 /bin/sh /usr/bin/x-session-manager
root 4608 0.0 0.8 12948 4340 ? S Mar24 0:00 dcopserver
root 2544 0.9 4.8 170672 24560 ? S< Mar24 66:11 /usr/X11R6/bin/X :0 -dpi 100 -nolisten tcp vt7 -auth /var/lib
root 4408 0.0 0.0 2672 480 ? S Mar24 0:00 ssh-agent
xds 6317 0.0 0.0 2672 352 ? S Mar24 0:00 ssh-agent
xds 8156 0.0 0.6 28740 3276 ? S Mar25 0:00 /usr/lib/evolution/1.4/evolution-wombat --oaf-activate-iid=OA
root 9170 0.0 0.1 3336 616 ? S Mar25 0:00 /usr/sbin/sshd
root 18329 0.0 0.1 1628 700 ? S Mar26 0:00 /sbin/syslogd -r
daemon 20289 0.0 0.0 1708 456 ? S Mar26 0:00 /sbin/portmap
xds 20974 0.0 0.2 3432 1160 ? S Mar26 0:00 /usr/sbin/famd -T 0
xds 21803 0.0 0.7 28156 3868 ? S Mar26 0:01 /usr/lib/gconf2/gconfd-2 13
root 22277 0.0 0.1 3028 884 ? S Mar26 0:00 -:0
xds 22296 0.0 0.1 2276 900 ? S Mar26 0:00 /bin/sh /usr/bin/kde3
xds 22338 0.0 0.0 2924 432 ? S Mar26 0:00 /usr/bin/ssh-agent kde3
xds 22350 0.0 1.3 20616 7076 ? S Mar26 0:00 kdeinit: Running...
xds 22353 0.0 1.4 20324 7340 ? S Mar26 0:00 kdeinit: dcopserver --nosid
xds 22356 0.0 1.6 21600 8120 ? S Mar26 0:00 kdeinit: klauncher
xds 22358 0.0 2.3 26672 11992 ? S Mar26 0:01 kdeinit: kded
xds 22372 0.0 1.9 27728 10040 ? S Mar26 0:01 kdeinit: knotify
xds 22373 0.0 0.0 1480 280 ? S Mar26 0:00 kwrapper ksmserver
xds 22375 0.0 1.8 22604 9336 ? S Mar26 0:01 kdeinit: ksmserver
xds 22377 0.0 2.1 24436 11080 ? S Mar26 0:04 kdeinit: kwin -session 117f000001000108013337000000025540000_
xds 22380 0.0 2.3 24484 11956 ? S Mar26 0:04 kdeinit: kdesktop
xds 22382 0.0 2.5 26616 13128 ? S Mar26 0:32 kdeinit: kicker
xds 22383 0.0 1.5 21044 7648 ? S Mar26 0:00 kdeinit: kio_file file /tmp/ksocket-xds/klauncherpcOPWa.slave
xds 22386 0.0 2.0 24296 10424 ? S Mar26 0:03 kdeinit: klipper
xds 22388 0.0 1.2 23464 6488 ? S Mar26 0:01 /usr/lib/evolution/1.4/evolution-alarm-notify --sm-config-pre
xds 22389 0.0 2.4 26976 12608 ? S Mar26 0:09 kdeinit: konsole -session 117f0000010001080141473000000559300
xds 22395 0.0 1.8 22016 9536 ? S Mar26 0:01 kalarmd --login
xds 22396 0.0 0.2 2580 1032 pts/0 S Mar26 0:00 /bin/bash
xds 22398 0.0 0.2 2588 1260 pts/1 S Mar26 0:00 /bin/bash
xds 22401 0.0 0.2 2580 1332 pts/2 S Mar26 0:00 /bin/bash
xds 22457 1.1 0.6 12308 3516 ? S Mar26 43:03 /usr/bin/artsd -F 10 -S 4096 -a oss -d -s 60 -m artsmessage -
xds 22464 0.0 3.6 54316 18544 ? S Mar26 0:30 evolution
xds 22467 0.0 3.6 54316 18544 ? S Mar26 0:00 evolution
xds 22468 0.0 3.6 54316 18544 ? S Mar26 0:01 evolution
xds 22469 0.0 3.6 54316 18544 ? S Mar26 0:00 evolution
xds 22505 0.0 1.1 20444 5880 ? S Mar26 0:05 xmms
xds 22506 0.0 1.1 20444 5880 ? S Mar26 0:00 xmms
xds 22507 0.0 1.1 20444 5880 ? S Mar26 0:00 xmms
xds 22509 0.0 1.1 20444 5880 ? S Mar26 0:00 xmms
xds 22517 0.0 5.5 53552 28164 ? S Mar26 1:03 /usr/lib/mozilla-firefox/firefox-bin
xds 22535 0.0 5.5 53552 28164 ? S Mar26 0:00 /usr/lib/mozilla-firefox/firefox-bin
xds 22536 0.0 5.5 53552 28164 ? S Mar26 0:00 /usr/lib/mozilla-firefox/firefox-bin
xds 22537 0.0 5.5 53552 28164 ? S Mar26 0:00 /usr/lib/mozilla-firefox/firefox-bin
xds 22574 0.0 1.9 22472 9752 ? S Mar26 0:06 appletproxy --configfile minipager_panelapplet_dtbyiugwgmag8k
xds 22621 0.0 3.6 54316 18544 ? S Mar26 0:00 evolution
root 10298 0.0 0.1 2596 1000 pts/0 S Mar26 0:00 bash
xds 20740 0.0 0.1 2276 900 ? S Mar26 0:00 /bin/sh /usr/bin/x-session-manager
xds 20788 0.0 0.1 2924 632 ? S Mar26 0:00 /usr/bin/ssh-agent x-session-manager
xds 20806 0.0 1.3 20600 6848 ? S Mar26 0:00 kdeinit: Running...
xds 20810 0.0 1.5 20284 7756 ? S Mar26 0:00 kdeinit: dcopserver --nosid
xds 20814 0.0 1.7 21540 8704 ? S Mar26 0:00 kdeinit: klauncher
xds 20816 0.0 2.0 22096 10468 ? S Mar26 0:00 kdeinit: kded
xds 20868 0.0 2.2 27368 11548 ? S Mar26 0:00 kdeinit: knotify
xds 20873 0.0 0.0 1480 280 ? S Mar26 0:00 kwrapper ksmserver
xds 20875 0.0 1.9 21348 9648 ? S Mar26 0:00 kdeinit: ksmserver
xds 20941 0.0 2.2 23528 11304 ? S Mar26 0:00 kdeinit: kwin -session 117f000001000108013337000000025540000_
xds 20945 0.0 1.7 24276 9056 ? S Mar26 0:01 kdeinit: kdesktop
xds 20951 0.0 1.9 25604 9704 ? S Mar26 0:04 kdeinit: kicker
xds 20956 0.0 1.3 20904 7068 ? S Mar26 0:00 kdeinit: kio_file file /tmp/ksocket-xds/klauncherlAZQub.slave
xds 20960 0.0 1.6 23116 8300 ? S Mar26 0:00 kdeinit: klipper
xds 20964 0.0 1.6 22752 8304 ? S Mar26 0:00 korgac --miniicon korganizer
xds 20983 0.0 1.6 21568 8352 ? S Mar26 0:00 kalarmd --login
xds 29687 0.0 1.5 21752 7892 ? S Mar26 0:00 /usr/bin/kdesktop_lock
xds 29690 0.0 13.5 74488 68584 ? SN Mar26 0:00 bsod -root -delay 20 -no-apple2
xds 4919 0.0 0.1 2660 712 ? S Mar26 3:04 SCREEN ./foldit
xds 4920 0.0 0.1 2280 864 pts/5 S Mar26 0:00 /bin/sh ./foldit
xds 4923 0.0 0.1 2280 864 pts/5 S Mar26 0:00 /bin/sh ./tmpfoldit.bat
xds 4929 0.0 0.1 2280 864 pts/5 S Mar26 0:00 /bin/sh ./foldit
xds 4933 8.6 10.8 78016 54832 pts/5 RN Mar26 309:19 ./foldtrajlite -f protein -n native -qf -it -rt
xds 20492 0.0 10.8 78016 54832 pts/5 SN Mar26 0:00 ./foldtrajlite -f protein -n native -qf -it -rt
root 16712 0.0 0.9 20044 5052 ? R 08:09 0:00 kpersonalizer --r --before-session
xds 16713 0.0 0.1 2480 832 pts/2 R 08:09 0:00 ps aux