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I understand now, I just assumed that the program used the amino acid chain to fold and just kept trying to fold that chain at random.
Thanks!

I noticed that I have always gotten my RMSD scores in the early stages of the generation set. I wonder if the quick 10,000 starting folds is necessary? Maybe it is better to just start with the...

Started the third set of 250 generations and finally got a lower RMSD 13.120
I noticed that I always have gotten lower RMSD's only during the early stages of the generation set. Interesting!
...

This new version of the folding program just doesn't seem to be getting lower RMSD's. I am 2/3 through my 2nd set of 250 generations and can't get lower than 13.46. It seemed to start out faster,...

Definitely keep folding and don't go back to the desktop.

Brian sorry about my attitude but I was frustrated that you said you couldn't see the problem. You should have mentioned the build up...

It is silly to report the settings. Run the screen saver when a changeover is occurring. It will not be able to connect to the server. A black screen will show up and just sit there for minutes. ...

Same problem with the screen saver. It will quit if it can't contact the server. This defeats the reason for using a screen saver. It is to go on without user intervention.
I am getting...

That shouldn't matter. The program can be made to tell whether a connection can be made or not and report it. A message on screen telling the user what it is doing and not leaving a black screen...

No, the program should be written better. It waits for over 3 minutes, which is way to long. I have DSL 512, so there is no reason for the program to take this long. At least there should be a...

Technically not a bug, but close. When the mainframe (network) is busy ie. changing proteins, the screensaver will be unable to send the data to the mainframe. How the screensaver handles this...

They didn't make it clear that we would all start over with a different protein. So I thought we were on the old one yet. The projects reporting to the general community needs work.

I just got the fix for the new update. It works, but dumbly I deleted the directory, before I got the fixed version. Now it appears I am starting over. Is there any way to get my 230 something...

It works, but dumbly I deleted the directory, before I got the fixed version. Now it appears I am starting over. Is there any way to get my 230 something generations and 11.46 scores back?

I right click on empty desktop. Choose properties, Then I choose screensaver tab (this is where it crashes) and folding screensaver is the default. Error says in black dos box:

[Null_caption]...

I ran the screen saver version. The SS uploaded my latest data, then downloaded the latest auto-update. I rebooted, tried running the screensaver and crash. I got a black dos box that said "Fatal...

I ran the screen saver version. The SS uploaded my latest data, then downloaded the latest auto-update. I rebooted, tried running the screensaver and crash. I got a black dos box that said "Fatal...

The news was finally put up that the update is postponed. What is sad about this is that the administration actually put yesterdays date on the notice. Presumably to make themselves look better for...

Check out the photos:

NASA Releases Dazzling Images from New Space Telescope
For Release: December 18, 2003

A new window to the universe has opened with today's release of the first dazzling...

Well it's past 10am and no program update?

I am glad the program update is coming out tommorow. I am stuck in some really slow generations. The program is keeping the same shape and trying the same thing over and over again.
Maybe the...

I think it is called RSMD? I noticed that lower scores don't necessarilly correlate with the number of generations completed. I have a score of 11.46 with just 80,000 work units, but some have...

What does the update include? Is it generations of 100 and ability to MAYBE get more similar proteins to the native one?