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Thread: Latest Protein Benchmarks

  1. 07-30-2002, 04:49 AM #1
    guru
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    Exclamation Latest Protein Benchmarks

    Since I restarted folding I decided to post some benchmarks for the new protein.

    Distributed Folding Windows dfGUI v1.7 Benchmark

    Sample Size : 425 structures over 363 seconds.
    Protein Size: 138AA

    Structures Per Second: 1.18
    Structures Per Minute: 70.8
    Structures Per Hour : 4250
    Structures Per Day : 102000

    OS : Microsoft Windows XP MHz: 1586
    CPU: AMD Athlon(tm) processor
    Client Switches: -df -qt -rt -p -1
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  2. 07-30-2002, 05:48 AM #2
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    Sunblade 100

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 1630 structures over 8006 seconds.
    Protein Size: 138AA

    Structures Per Second: 0.20
    Structures Per Minute: 12.22
    Structures Per Hour: 732.95
    Structures Per Day: 17590.80

    Solaris OS - Running Kernel Version 5.8
    UltraSparc IIe @ 500 mhz ( 256K cache)
    ------------------------------------------------------------
    Last edited by guru; 07-30-2002 at 05:57 AM.
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  3. 07-30-2002, 05:55 AM #3
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    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 340 structures over 1172 seconds.
    Protein Size: 138AA

    Structures Per Second: 0.29
    Structures Per Minute: 17.41
    Structures Per Hour: 1044.37
    Structures Per Day: 25064.88

    Linux OS - Running Kernel Version 2.2.14
    Celeron (Mendocino) @ 533mhz (128 KB cache)
    ------------------------------------------------------------
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  4. 07-30-2002, 07:19 AM #4
    Chinasaur
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    Re: Sunblade 100

    Originally posted by guru
    ------------------------------------------------------------


    Structures Per Second: 0.20
    Structures Per Minute: 12.22
    Structures Per Hour: 732.95
    Structures Per Day: 17590.80

    Solaris OS - Running Kernel Version 5.8
    UltraSparc IIe @ 500 mhz ( 256K cache)
    ------------------------------------------------------------
    Yikes

    That's the SunBlade I was thinking of buying! Even at 500Mhz it's underperforming an XP by at least 20K structures a day.

    Agent Smith was right!: "I hate this place. This zoo. This prison. This reality, whatever you want to call it, I can't stand it any longer. It's the smell! If there is such a thing. I feel saturated by it. I can taste your stink and every time I do, I fear that I've somehow been infected by it."
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  5. 07-30-2002, 02:41 PM #5
    guru
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    Here's the latest benchmarks on the same systems.

    ------------------------------------------------------------
    Distributed Folding Windows dfGUI v1.7 Benchmark

    Sample Size : 4570 structures over 2794 seconds.
    Protein Size: 157AA

    Structures Per Second: 1.64
    Structures Per Minute: 98.1
    Structures Per Hour : 5888
    Structures Per Day : 141320

    OS : Microsoft Windows XP MHz: 1586
    CPU: AMD Athlon(tm) processor
    Client Switches: -df -qt -rt -p -1
    ------------------------------------------------------------

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 220 structures over 601 seconds.
    Protein Size: 157AA

    Structures Per Second: 0.37
    Structures Per Minute: 21.96
    Structures Per Hour: 1317.80
    Structures Per Day: 31627.20

    Solaris OS - Running Kernel Version 5.8
    @ 500 mhz ( 256K cache)
    ------------------------------------------------------------
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  6. 07-30-2002, 03:24 PM #6
    Chinasaur
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    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 5695 structures over 3512 seconds.

    Structures Per Second: 1.62
    Structures Per Minute: 97.29
    Structures Per Hour: 5837.70
    Structures Per Day: 140104.80

    Linux OS - Running Kernel Version 2.4.8-26mdk
    AMD Athlon(tm) XP 1800+ @ 1534mhz (256 KB cache)

    Mandrake 8.1 with -rt and 0 nice
    Agent Smith was right!: "I hate this place. This zoo. This prison. This reality, whatever you want to call it, I can't stand it any longer. It's the smell! If there is such a thing. I feel saturated by it. I can taste your stink and every time I do, I fear that I've somehow been infected by it."
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  7. 07-30-2002, 04:27 PM #7
    Wedge
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    ------------------------------------------------------------
    Distributed Folding Windows dfGUI v1.7 Benchmark

    Sample Size : 10020 structures over 7882 seconds.
    Protein Size: 157AA

    Structures Per Second: 1.27
    Structures Per Minute: 76.3
    Structures Per Hour : 4578
    Structures Per Day : 109864

    OS : Microsoft Windows XP MHz: 1379
    CPU: AMD Athlon(tm) MP processor
    Client Switches: -df -rt -p 20
    ------------------------------------------------------------
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  8. 07-30-2002, 05:17 PM #8
    guru
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    Wedge , try using the -qt option in windows. It should run faster but you won't get any visual output. If you want to see the progress use DFGui.
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  9. 07-30-2002, 06:19 PM #9
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    SunBlade 100 info

    Chinasaur, My Sunblade 100 is a file server (420G) and it also doubles as my VPN system so it's not 100% DF. It's more of a desktop system that I'm running as a server. I need to upgrade the memory from 256M to 512M. That should help some.

    guru
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  10. 07-30-2002, 08:56 PM #10
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    Dual Celeron

    here's my dual Celeron 366@550. This is the 157AA protein.

    Proc 1
    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 5100 structures over 10025 seconds.

    Structures Per Second: 0.51
    Structures Per Minute: 30.52
    Structures Per Hour: 1831.42
    Structures Per Day: 43954.08

    Linux OS - Running Kernel Version 2.4.18-6mdksmp
    Celeron (Mendocino) @ 551mhz (128 KB cache)
    ------------------------------------------------------------


    Proc 2

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 5580 structures over 10004 seconds.

    Structures Per Second: 0.56
    Structures Per Minute: 33.47
    Structures Per Hour: 2008.00
    Structures Per Day: 48192.00

    Linux OS - Running Kernel Version 2.4.18-6mdksmp
    Celeron (Mendocino) @ 551mhz (128 KB cache)
    ------------------------------------------------------------
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  11. 07-30-2002, 09:50 PM #11
    Paratima
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    I just can't seem to get this Thorobred running right:
    ------------------------------------------------------------
    Wed Jul 31 21:43:41 EDT 2002
    Distributed Folding Linux Benchmark Script V1.1
    Sample Size: 41370 structures over 22009 seconds.
    Structures Per Second: 1.88
    Structures Per Minute: 112.78
    Structures Per Hour: 6766.87
    Structures Per Day: 162404.88
    Linux OS - Running Kernel Version 2.4.10-4GB
    AMD Athlon(tm) Processor @ 1869mhz (256 KB cache)
    ------------------------------------------------------------

    Think I'm gonna go play (carefully!) with voltages...
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  12. 07-31-2002, 11:52 PM #12
    Kosh
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    Everything on linux now, saw a 25% boost for my celeron

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0


    Sample Size: 50950 structures over 36608 seconds.

    Structures Per Second: 1.39
    Structures Per Minute: 83.51
    Structures Per Hour: 5010.38
    Structures Per Day: 120249.12

    Linux OS - Running Kernel Version 2.4.18
    AMD Athlon(TM) XP1600+ @ 1410mhz (256 KB cache)
    ------------------------------------------------------------

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 7900 structures over 6621 seconds.

    Structures Per Second: 1.19
    Structures Per Minute: 71.59
    Structures Per Hour: 4295.42
    Structures Per Day: 103090.08

    Linux OS - Running Kernel Version 2.4.18
    Intel(R) Pentium(R) III CPU family 1266MHz @ 1273mhz (512 KB cache)
    ------------------------------------------------------------

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 34500 structures over 34822 seconds.

    Structures Per Second: 0.99
    Structures Per Minute: 59.45
    Structures Per Hour: 3566.71
    Structures Per Day: 85601.04

    Linux OS - Running Kernel Version 2.4.18
    Celeron (Coppermine) @ 1009mhz (128 KB cache)
    ------------------------------------------------------------

    ------------------------------------------------------------
    Distributed Folding Linux Benchmark Script V1.0

    Sample Size: 29600 structures over 34767 seconds.

    Structures Per Second: 0.85
    Structures Per Minute: 51.08
    Structures Per Hour: 3064.98
    Structures Per Day: 73559.52

    Linux OS - Running Kernel Version 2.4.18
    AMD Duron(tm) Processor @ 807mhz (64 KB cache)
    ------------------------------------------------------------
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  13. 08-11-2002, 08:52 AM #13
    dtsang
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    Mac benchmarks

    I benchmarked my Foldtrajlite client manually and found that it folds 33,000 proteins in one day.

    I am running a Power Mac G4 with a PowerPC 7400 chip at 466 MHz. The -rt switch is on, using the latest CASP protein. I have 384 MB RAM.
    Derek
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