Reply With QuoteI saw that once. Deleted the filelist.txt file and it took right off.
My client crashed overnight and now all I can get is:
[NULL_caption] FATAL ERROR: [002.003] Unable to read trajectory distribution, please create a new one
Hit Return
Anyone any ideas how to fix it (without losing my work)? I am running XP and the text client and I have no idea how to create a new trajectory distribution.
Thanks,
SFS
I backed up my folding directory and tried that, but it started at gen 0 again. Is there anyway I can start from where it left off? If not I guess I will do this and start again. Thanks.
I'm having the same problem on my Windows XP box, df running as a service, dfgui 3.0 was also running.
From my logs:
========================[ Jun 18, 2003 6:25 PM ]========================
FATAL ERROR: [099.099] {trajtools.c, line 3585} Cannot write database file C:\WINDOWS\TEMP\43890_5644.dbf to disk
========================[ Jun 18, 2003 7:02 PM ]========================
========================[ Jun 18, 2003 7:13 PM ]========================
========================[ Jun 18, 2003 8:07 PM ]========================
ERROR: [001.001] {trajtools.c, line 3480} Unable to open trajectory distribution file 8geejxka_protein_21.trj
FATAL ERROR: [002.003] {foldtrajlite2.c, line 4700} Unable to read trajectory distribution, please create a new one
There is plenty of hard drive space, so I don't understand the write failure message, and included it just in case it is relevant.
Thanks!
This could be a bug.. I will see if anyone else reports similar problems to be sure though. As for the error writing to TEMP, any idea why? Permissions perhaps??
Howard Feldman
The write error only showed up once,. This is Windows XP, so it isn't secure, or anything. Anything can write to temp. There is plenty of disk space.
I doubt it is related, but since it was the last thing in the logs before the other error, I included it.
Latest set of error messages is:
ERROR: [000.000] {ncbi_socket.c, line 1258} [SOCK::s_Connect] Failed pending connect to www.distributedfolding.org:80 (Unknown) {errno=No such file or directory}
ERROR: [000.000] {ncbi_connutil.c, line 801} [URL_Connect] Socket connect to www.distributedfolding.org:80 failed: Unknown
ERROR: [001.001] {trajtools.c, line 3480} Unable to open trajectory distribution file 8geejxka_protein_21.trj
FATAL ERROR: [002.003] {foldtrajlite2.c, line 4700} Unable to read trajectory distribution, please create a new one
*shrug* I'm on a T1 here, no other connection problems. I can ping distributedfolding.org and connect to the website.
Thanks.
well it crashed again, and I got the exact same error when I tried to start it again. If I delete the filelist.txt it will run again, but starts from gen 0. It looks like it was not a one off...
Same here, small furry spider. I just keep deleting filelist.txt, and loosing the data.
At least my linux boxen are happy.
I don't seem to be able to get past mid 30s generation without this happening. It happens whether or not I use dfGUI, quiet or not. I am running the extra memory switch but I have 512MB.
My machine is a PIII 933 running XP home. (my windows 2000 P4 has no problems)
If anyone else has this problem, please post so we are not alone
help...
Can you provide a screenshot of what it looks like when it crashes? Failing that, can you tell me EXACTLY what it is doing when it crashes - minimizaing energy, creating trajectory distribution, or building structures?
Howard Feldman
OK, I will get you a screenshot, I just need to wait for it to crash again. I copied the whole directory the first time it did it, so I could provide you with any of the files if you want.
Thanks.
ok, I got one. It stoppred responding at a much lower generation this time.
When I restart it I get exact the same error as I describe before.
Thanks for your help.
SFS
I got something that looked a little different. No MS error, just a df error. When I get back to work Tues., I'll get a screenshot.
Thanks.
Ok, I understand now. So the real problem is not the error message, but rather that the cleint is crashing at this point. If it crashes at exactly this point, the error you are getting follows as a side effect.
I have no idea why it is crashing on your machine however, as the program should be very stable. Please send a 'dir' of the files in the directory at the time of the crash (post in this thread is fine). There is no need to see the actual files except perhaps progress.txt and filelist.txt (if they are present). Something funny is causing this crash.
Is there anything 'unusual' about your machine or Windows installation we should know, any non-default? Also what is your CPU and version of Windows? Thanks.
Howard Feldman
ok, here is a list of the files in the directory last time it crashed:
20/06/2003 23:38 <DIR> .
20/06/2003 23:38 <DIR> ..
06/09/2002 14:31 35,644 blpotential.txt
06/09/2002 14:31 506,906 bstdt.val
06/09/2002 14:31 5,240 cbdata
06/09/2002 14:31 5,769 CompatibilityNotes.txt
06/09/2002 14:31 1,871 copyright
06/09/2002 14:31 1,614 distrib-update.bat
16/06/2003 12:36 337,530 database.obs
16/06/2003 11:57 3,018,752 foldtrajlite.exe
16/06/2003 12:31 58,181 native.val
06/09/2002 14:31 21,163 param19_eef1.inp
16/06/2003 12:31 4,708,093 protein.trj
16/06/2003 12:35 28,973 readme1st.txt
06/09/2002 14:31 2,803,905 rotlib.bin.bz2
06/09/2002 14:31 2,327 skel.prt
06/09/2002 14:31 12,432 sleep.exe
06/09/2002 14:31 2,098 solvpar.inp
06/09/2002 14:31 49,029 toph19_eef1.inp
16/06/2003 12:36 9,401 whatsnew.txt
06/09/2002 14:31 3,142 zhangatm.txt
06/09/2002 14:31 2,926 zhangeij.txt
16/06/2003 12:36 337,530 database.seq
20/06/2003 23:33 1,027 foldit.bat
16/06/2003 12:31 144 sspred.val
20/06/2003 23:33 146,309 error.log
19/09/2002 22:09 14,898 ejenck5s_protein_0111088.val.bz2
19/09/2002 01:08 10 handle.txt
19/09/2002 01:09 3 autoupdate.cfg
04/10/2002 18:57 14,818 ejenck5s_protein_0365212.val.bz2
20/06/2003 23:26 113 progress.txt
20/06/2003 23:33 413 filelist.txt
21/09/2002 22:10 14,892 ejenck5s_protein_0015792.val.bz2
05/10/2002 00:58 15,012 ejenck5s_protein_0020201.val.bz2
07/11/2002 00:44 18,731 ejenck5s_protein_0322796.val.bz2
19/01/2003 18:33 16,448 ejenck5s_protein_1061578.val.bz2
11/12/2002 21:09 18,871 ejenck5s_protein_0121336.val.bz2
13/10/2002 17:33 15,083 ejenck5s_protein_0100219.val.bz2
01/11/2002 20:38 18,701 ejenck5s_protein_0002228.val.bz2
07/11/2002 18:06 18,708 ejenck5s_protein_0045512.val.bz2
11/11/2002 20:50 18,672 ejenck5s_protein_0212811.val.bz2
13/11/2002 14:52 18,805 ejenck5s_protein_0101131.val.bz2
30/05/2003 18:31 23,310 ejenck5s_protein_0135950.val.bz2
23/11/2002 18:59 18,565 ejenck5s_protein_0371695.val.bz2
24/11/2002 21:51 18,692 ejenck5s_protein_0045524.val.bz2
25/11/2002 19:16 18,707 ejenck5s_protein_0048476.val.bz2
19/12/2002 15:39 0 ejenck5s_protein_0826012.val.bz2
27/12/2002 23:36 0 ejenck5s_protein_0877603.val.bz2
01/01/2003 00:57 18,596 ejenck5s_protein_0130685.val.bz2
02/01/2003 18:23 18,516 ejenck5s_protein_0083126.val.bz2
06/01/2003 14:34 18,848 ejenck5s_protein_0251743.val.bz2
07/01/2003 20:56 18,400 ejenck5s_protein_0006588.val.bz2
09/01/2003 06:31 16,362 ejenck5s_protein_0135812.val.bz2
20/01/2003 18:04 16,227 ejenck5s_protein_0121897.val.bz2
21/01/2003 23:22 16,232 ejenck5s_protein_0180290.val.bz2
04/02/2003 13:46 15,434 ejenck5s_protein_0132394.val.bz2
23/01/2003 10:02 16,356 ejenck5s_protein_0095138.val.bz2
06/02/2003 22:41 15,314 ejenck5s_protein_0221963.val.bz2
23/04/2003 15:18 23,007 ejenck5s_protein_0165364.val.bz2
10/02/2003 22:37 15,513 ejenck5s_protein_0101279.val.bz2
12/02/2003 01:07 15,312 ejenck5s_protein_0008648.val.bz2
28/02/2003 14:23 14,164 ejenck5s_protein_0190329.val.bz2
14/03/2003 13:01 14,103 ejenck5s_protein_0935856.val.bz2
14/03/2003 19:02 14,132 ejenck5s_protein_0000684.val.bz2
15/03/2003 11:41 14,068 ejenck5s_protein_0036355.val.bz2
24/03/2003 14:53 14,140 ejenck5s_protein_0549147.val.bz2
25/03/2003 20:52 14,258 ejenck5s_protein_0061309.val.bz2
28/04/2003 13:22 23,048 ejenck5s_protein_0153573.val.bz2
02/05/2003 12:08 0 ejenck5s_protein_0166555.val.bz2
06/05/2003 08:38 0 ejenck5s_protein_0016125.val.bz2
13/05/2003 13:52 0 ejenck5s_protein_0170002.val.bz2
15/05/2003 01:16 23,309 ejenck5s_protein_0060057.val.bz2
16/05/2003 20:38 23,404 ejenck5s_protein_0035696.val.bz2
26/05/2003 16:46 23,357 ejenck5s_protein_0221376.val.bz2
20/05/2003 04:32 0 ejenck5s_protein_0080022.val.bz2
20/05/2003 23:44 23,409 ejenck5s_protein_0025168.val.bz2
31/05/2003 13:41 23,237 ejenck5s_protein_0017800.val.bz2
07/06/2003 22:39 23,175 ejenck5s_protein_0085713.val.bz2
31/05/2003 21:11 23,060 ejenck5s_protein_0000258.val.bz2
02/06/2003 20:06 23,397 ejenck5s_protein_0056825.val.bz2
04/06/2003 05:55 0 ejenck5s_protein_0060003.val.bz2
05/06/2003 20:38 23,230 ejenck5s_protein_0001635.val.bz2
10/06/2003 09:15 0 ejenck5s_protein_0037977.val.bz2
12/06/2003 01:00 23,026 ejenck5s_protein_0063425.val.bz2
15/06/2003 23:42 23,178 ejenck5s_protein_0011437.val.bz2
20/06/2003 16:15 182,166 ejenck5s_protein_37.trj
19/06/2003 02:19 62,113 ejenck5s_0_ejenck5s_protein_32_0000013.val
16/06/2003 12:35 3,072 phipsiwalk_dict.cdx
16/06/2003 12:35 14,310 phipsiwalk_dict.dbf
16/06/2003 12:35 1,534,976 phipsiwalk_dict.fpt
19/06/2003 02:19 62,087 ejenck5s_0_ejenck5s_protein_32_0000013_min.val
19/06/2003 02:19 13,471 ejenck5s_0_ejenck5s_protein_31_0000015_min.val.bz2
19/06/2003 02:19 0 ejenck5s_0_ejenck5s_protein_32_0000013_min.val.bz2
20/06/2003 16:15 62,134 ejenck5s_0_ejenck5s_protein_36_0000032.val
20/06/2003 01:59 62,139 ejenck5s_0_ejenck5s_protein_16_0000020.val
20/06/2003 01:59 62,113 ejenck5s_0_ejenck5s_protein_16_0000020_min.val
20/06/2003 16:15 62,108 ejenck5s_0_ejenck5s_protein_36_0000032_min.val
20/06/2003 01:59 13,387 ejenck5s_0_ejenck5s_protein_15_0000047_min.val.bz2
20/06/2003 01:54 1,051 fold_0_ejenck5s_15_ejenck5s_protein_16.log.bz2
20/06/2003 01:59 0 ejenck5s_0_ejenck5s_protein_16_0000020_min.val.bz2
20/06/2003 16:15 13,548 ejenck5s_0_ejenck5s_protein_35_0000040_min.val.bz2
20/06/2003 16:10 1,047 fold_0_ejenck5s_30_ejenck5s_protein_36.log.bz2
20/06/2003 16:15 0 ejenck5s_0_ejenck5s_protein_36_0000032_min.val.bz2
20/06/2003 23:27 62,144 ejenck5s_0_ejenck5s_protein_9_0000012.val
20/06/2003 23:27 62,118 ejenck5s_0_ejenck5s_protein_9_0000012_min.val
20/06/2003 23:27 189,334 ejenck5s_protein_10.trj
20/06/2003 23:27 13,631 ejenck5s_0_ejenck5s_protein_8_0000046_min.val.bz2
20/06/2003 23:27 0 ejenck5s_0_ejenck5s_protein_9_0000012_min.val.bz2
20/06/2003 23:21 1,055 fold_0_ejenck5s_10_ejenck5s_protein_9.log.bz2
107 File(s) 15,449,274 bytes
2 Dir(s) 1,177,059,328 bytes free
The contents of filelist.txt are:
.\fold_0_ejenck5s_45_ejenck5s_protein_8.log.bz2
.\ejenck5s_0_ejenck5s_protein_8_0000046.val
.\fold_0_ejenck5s_10_ejenck5s_protein_9.log.bz2
.\ejenck5s_0_ejenck5s_protein_9_0000012.val
CurrentStruc 0 51 126 9 1 12 12.680 -260.181 774.543 260.838 6434575.000 0.850 1.500 250.000 ---------------------HHHHHHHHH------HHHH-----------------HHHHH-----------------------HHHH-------
6c8032d4be9e0e657a58c802cdcf4d65
The contents of progress.txt are:
Building structure 46 generation 9
4 until next generation
1 generations buffered
Best Energy so far: 12.680
My system is as follows:
PIII 933
512MB RAM
20GB windows partition (over 1GB free)
10Mbit internet connection (connected through a router)
running winXP home (version 2002)
I have AV software (sophos) and firewall (zone alarm) running
I am logged in as administrator
The only non-standard thing is that my graphics card is running on an 89MHz AGP bus (sapphire radeon 8500LE 128MB) due to a processor upgrade a couple of years ago from a celeron 300, but I have not had any problems with this so far.
If you want any other files, or want me to do any particular tests, please let me know.
SFS
I have the trajectory error on one of mine gen 246, 46 gen buffered. Win2k pro 1600MP dually running two instances with GUI. Not a sevvice install. The other client had a previous gen missing error but is still running. I use dialup. error log is 558kb in size after 3 days. EDIT both clients have the previous gen missing error.
Last edited by ken008; 06-21-2003 at 02:20 PM.
I've had this a couple of times now, I've only been folding phase 2 for less than two days using the screen saver on XP.
It gets to a stage where it is supposed to be looking for alternatives but it just stops (for unknown reasons) when I try to exit it, it is unresponsive to movement of the mouse.
When it try to start again it gets all upset and won't.
foldtraj_screensaver
========================[ May 24, 2003 2:27 AM ]========================
========================[ May 24, 2003 2:27 AM ]========================
========================[ May 24, 2003 2:28 AM ]========================
========================[ May 24, 2003 2:28 AM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
========================[ May 24, 2003 2:28 AM ]========================
========================[ May 24, 2003 2:28 AM ]========================
========================[ May 24, 2003 2:28 AM ]========================
========================[ May 24, 2003 2:28 AM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
========================[ May 24, 2003 2:29 AM ]========================
========================[ May 24, 2003 2:33 AM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
========================[ May 24, 2003 2:41 AM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
========================[ May 24, 2003 4:52 AM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
ERROR: [010.003] {taskapi.c, line 1217} [ReadServerResponse] Timeout waiting for response, got 0 chars.
ERROR: [000.000] {foldtrajlite2.c, line 4127} Error during upload: NO RESPONSE FROM SERVER - WILL TRY AGAIN LATER
ERROR: [000.000] {foldtrajlite2.c, line 4050} Warning during upload: STATUS 910 MISSING PREVIOUS OR ILLEGAL GENERATION
========================[ May 24, 2003 10:28 PM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
========================[ May 25, 2003 6:16 AM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
ERROR: [010.003] {taskapi.c, line 1217} [ReadServerResponse] Timeout waiting for response, got 0 chars.
ERROR: [000.000] {foldtrajlite2.c, line 4127} Error during upload: NO RESPONSE FROM SERVER - WILL TRY AGAIN LATER
ERROR: [000.000] {foldtrajlite2.c, line 4050} Warning during upload: STATUS 910 MISSING PREVIOUS OR ILLEGAL GENERATION
========================[ May 25, 2003 9:48 PM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
ERROR: [001.001] {trajtools.c, line 3480} Unable to open trajectory distribution file C:\PROGRA~1\DISTRI~1\mt5jcqti_protein_50.trj
FATAL ERROR: [002.003] {foldtrajlite2.c, line 4700} Unable to read trajectory distribution, please create a new one
========================[ May 25, 2003 9:52 PM ]========================
========================[ May 25, 2003 9:52 PM ]========================
ERROR: [001.007] {saver.c, line 1452} File failed checksum C:\PROGRA~1\DISTRI~1\df_logo.bmp
ERROR: [001.001] {trajtools.c, line 3480} Unable to open trajectory distribution file C:\PROGRA~1\DISTRI~1\mt5jcqti_protein_50.trj
FATAL ERROR: [002.003] {foldtrajlite2.c, line 4700} Unable to read trajectory distribution, please create a new one
filelist
C:\PROGRA~1\DISTRI~1\fold_0_mt5jcqti_0_mt5jcqti_pr
otein_49.log.bz2
C:\PROGRA~1\DISTRI~1\mt5jcqti_0_mt5jcqti_protein_4
9_0000040.val
C:\PROGRA~1\DISTRI~1\fold_0_mt5jcqti_0_mt5jcqti_pr
otein_50.log.bz2
C:\PROGRA~1\DISTRI~1\mt5jcqti_0_mt5jcqti_protein_5
0_0000031.val
CurrentStruc 0 51 126 50 1 31 9.286 -2385.688 168.473 -1541.225 132404496.000 1.700 3.200 2690.305 ------------------HHHHHH-HHHHHHHH----HHHHH--------------HHHHHH-----------------------HHHHH------
dc5f76e3346999855e73b2d7dc10f615
For this error:
[NULL_caption] FATAL ERROR: [002.003] Unable to read trajectory distribution, please create a new one
Hit Return
Hit enter to close client, rename the *.trj file to the previous generation as follows:
xxxxxxxx_protein_10.trj to xxxxxxxx_protein_9.trj
Restart the client, it'll then regenerate the "Generation Trajectory Distribution", and continue where it left off without losing your place in generations, or having to start from 0 generation, definately a client bug.
Thanks dgr, that lets me carry on folding. Now I just need to wait for a proper fix.
SFS
I just got the same thing.
How I got it:
Stop client by deleting lock file.
Rerun client.
It tries to upload, but times out after a few mins.
It waits the 5 seconds for you to change your username.
Then
[foldtrajlite] FATAL ERROR: [002.003] Unable to read trajectory distribution, please create a new one
Hit Return
Now, if I'm supposed to delete my filelist.txt, that's 65 generations lost.
BTW, I tried dgr's method, it still gave the same error.
I ran into it again, a little different this time I had to rename it to the current generation. It worked also, I thought the BETA phase was over???Originally posted by Scotttheking
I just got the same thing.
How I got it:
Stop client by deleting lock file.
Rerun client.
It tries to upload, but times out after a few mins.
It waits the 5 seconds for you to change your username.
Then
[foldtrajlite] FATAL ERROR: [002.003] Unable to read trajectory distribution, please create a new one
Hit Return
Now, if I'm supposed to delete my filelist.txt, that's 65 generations lost.
BTW, I tried dgr's method, it still gave the same error.
For future reference, how do I find out the current generation (other then the progress.txt file)?Originally posted by dgr
I ran into it again, a little different this time I had to rename it to the current generation. It worked also, I thought the BETA phase was over???
For now, I gave up and deleted the 66 or so buffered generations.
Originally posted by dgr
I ran into it again, a little different this time I had to rename it to the current generation. It worked also, I thought the BETA phase was over???har har, yes, well apparently beta testing didn't find all the bugs. As soon as we can reproduce this problem it will be fixed.
Howard Feldman
In the mean time I have given up on running as service on my XP/w2k boxen. Back to running with DfGui no quite mode and dos box visable. At least you can see whats happening. Don't seem to have any more problems.... knock on wood.....
Originally posted by Brian the Fist
I was just being sarcastic, anyway the biggest problems I've seen is the error listed here, which I figured how to keep things upto pace and no lost work, however the second bigest one I see is the "missing previous generation" one, can you at least accept what results are there, it's bad enough we'll have to bite the bullet and start fresh because you cannot edit the filelist.txt without producing a 000.000 error (which BTW is a good way to ensure no dups or cheating), but at least credit the work done upto that point, what would be better is to accept it and let us continue with the next generation, but that would be asking too much!
I'm also running the DOS client version with no problems. I just noticed that nobody seems to be having problems with the DOS client.Originally posted by cygnussphere
Back to running with DfGui no quite mode and dos box visable. At least you can see whats happening. Don't seem to have any more problems
I believe that people posting these problems run the CLI.Originally posted by NicColt
I'm also running the DOS client version with no problems. I just noticed that nobody seems to be having problems with the DOS client.
2 of my 3 DF boxen have now run into client errors.
The first hit the "prev gen missing" error yesterday, after 5 days of errorless operation. (nothing but connect failures in the log). It seems to have uploaded properly since, so I'm keeping my fingers crossed.
Now today one of my Athlon boxes gives the prev gen error AND the trajectory error. None of these boxen are running as a service (all running DFgui 3.01 and txt-cli under Win2k)
So far my overclocked machine is the only one to not fail.
I'm going to upgrade to DFgui 3.1, since my problems have all been noticed while running the monitoring prog. Plus I will try some of the .trj renamings suggested above, but failing that I will try the sneakernet info since I am not about to lose 148 generations without a bit of a fight.
I'm happy to post exact error log text, but it seems to fit exactly with those who posted before me.
I too was having this problem. After reading many of the messages on the boards and this thread I was able to fix mine. What I did was to delete all *but* the first two entries in filelist.txt and the folding was able to restart with only losing the information on the current generation.
Good luck folding everyone!
-nearlyfailedchemist-
Nearly failed is much better than the alternate...
OK, that didn't work quite as well as planned. An error message is generated each time the screensaver starts - Previous generation missing. I now have 33 generations buffered and they will not upload. Bummer, I say again Bummer
Oh well, it's still cool watching the proteins being put together.
Happy folding!
Nearly failed is much better than the alternate...
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