Looking in the error.log file and seeing something about not being able to find each entry that is buffered on the HDD...
ERROR: [000.000] {foldtrajlite2.c, line 3951} Cannot find structure from previous generation .\handle_0_handle_protein_90_0000018_min.val; find it manually or delete filelist.txt to continue

After stopping and restarting several times and seeing the same error messages repeated, one for each buffered WU...
I noticed a .\ in the buffered units and not in front of the current being worked on unit, so I removed the .\ from in front of each one.

FATAL ERROR: [000.000] {foldtrajlite2.c, line 1087} Upload list has been tampered with, please delete filelist.txt and try again

So, I renamed filelist.txt to filelist.txt.old.txt just so that it would continue to run.

In the mean time, 24 units are buffered and sitting in the \distribfold directory.

A little help please...