From the readme (You DID read the readme, right?) at:
http://www.distributedfolding.com/readmeclient.html
Quiet Mode
----------
To run the client in quiet mode (i.e. no output whatsoever to the terminal),
simply edit the foldit script (foldit.bat on Windows) and add "-qt" (without
the quotes) to the end of the line containing "foldtrajlite -f protein -n
native". This may be useful if you are, for example, starting jobs remotely.
You can then terminate jobs by removing foldtrajlite.lock or hitting the 'Q'
key (the latter works on Windows only however). It is recommended you select
"E-mail me when updates are available" on the logged-in page at
http://www.distributedfolding.org if you are running in quiet mode, or else
you won't be aware when a new update is required. Alternatively, see
non-interactive auto-update above. To check progress while in quiet mode, a
file called "progress.txt" will be written to the directory where the program
is installed so you can monitor its progress still. You may customize this
further by adding '-g ###' where ### is a number, to the foldit script.
This is how often (in number of structures) you want this progress.txt to
be updated, to avoid excessing disk writing. If you put '-g 0' this will
disable the progress.txt output altogether.