RNA World

[yoyo]

no problem, strace is still running

wu is at 99.352% after 168hours.

I think this one finished and validated.
yoyo

[Bok]

yup. Just noticed myself. Here is the end of the strace if you are interested.

times({tms_utime=61225425, tms_stime=3868, tms_cutime=0, tms_cstime=0}) = 550682189
lseek(7, 0, SEEK_SET)                   = 0
write(7, "0.999167", 8)                 = 8
time(NULL)                              = 1267728664
times({tms_utime=61339827, tms_stime=3902, tms_cutime=0, tms_cstime=0}) = 550797050
time(NULL)                              = 1267728664
times({tms_utime=61339827, tms_stime=3902, tms_cutime=0, tms_cstime=0}) = 550797050
time(NULL)                              = 1267728680
times({tms_utime=61341235, tms_stime=3912, tms_cutime=0, tms_cstime=0}) = 550798650
write(1, "    48:43:39\n  filter      -  lo"..., 67) = 67
time(NULL)                              = 1267728680
times({tms_utime=61341235, tms_stime=3912, tms_cutime=0, tms_cstime=0}) = 550798652

mremap(0x2aaaaf386000, 292360192, 511516672, MREMAP_MAYMOVE) = 0x2aaaaf386000
time(NULL)                              = 1267736446
times({tms_utime=62065739, tms_stime=4064, tms_cutime=0, tms_cstime=0}) = 551575236
write(1, "    02:09:26\n# --------  ---  --"..., 1399) = 1399
munmap(0x2aaaaf386000, 511516672)       = 0
write(1, "//\n", 3)                     = 3
read(8, "", 4096)                       = 0
time(NULL)                              = 1267736446
times({tms_utime=62065739, tms_stime=4071, tms_cutime=0, tms_cstime=0}) = 551575245
lseek(8, 0, SEEK_SET)                   = 0
open("cmfile.xxx", O_RDONLY)            = -1 ENOENT (No such file or directory)
open("cmfile.xxx", O_WRONLY|O_CREAT|O_TRUNC, 0666) = 9
read(8, "INFERNAL-1 [1.0.2]\nNAME     Intr"..., 4096) = 4096
read(8, ".497  -5.274  -4.934  0.000  0.0"..., 4096) = 4096
read(8, "10  -1.005  -6.446  -3.975  0.66"..., 4096) = 4096
read(8, "   104   103 3   106     3 -10.1"..., 4096) = 4096
read(8, "MP   141   140 1   145     6 -10"..., 4096) = 4096
read(8, "     D   175   173 3   176     5"..., 4096) = 4096
read(8, "             \n    IR   212   212"..., 4096) = 4096
read(8, "18  -0.006  -9.594  -9.874 -10.2"..., 4096) = 4096
read(8, ".164                          0."..., 4096) = 4096
read(8, " 4  -9.716  -9.923  -0.008  -8.3"..., 4096) = 4096
read(8, " 352 6   355     3 -10.745  -0.0"..., 4096) = 4096
read(8, "MATP  103 ]\n    MP   389   388 6"..., 4096) = 4096
read(8, "  -3.908  0.660 -0.612 -0.293 -0"..., 4096) = 4096
read(8, "                  0.000  0.000  "..., 4096) = 4096
read(8, "  -5.695  -0.829  -3.908  0.660 "..., 4096) = 4096
read(8, ".906                          0."..., 4096) = 4096
read(8, "]\n    ML   568   567 2   570    "..., 4096) = 4096
read(8, "                    0.000  0.000"..., 4096) = 4096
read(8, " 6   644     6  -6.988  -5.717  "..., 4096) = 3245
fstat(9, {st_mode=S_IFREG|0644, st_size=0, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2aaaaaaad000
write(9, "INFERNAL-1 [1.0.2]\nNAME     Intr"..., 4096) = 4096
write(9, " -9.399                         "..., 4096) = 4096
write(9, "  1.652 -2.459  0.633  0.114 -1."..., 4096) = 4096
write(9, "         0.000  0.000  0.000  0."..., 4096) = 4096
write(9, "    6  -7.451  -7.797  -2.512  -"..., 4096) = 4096
write(9, "  151     6  -6.988  -5.717  -1."..., 4096) = 4096
write(9, ".062  0.095 -0.746 -2.041 -2.246"..., 4096) = 4096
write(9, " 0.000  0.000  0.000  0.000 \n\t\t\t"..., 4096) = 4096
write(9, "5  -0.829  -3.908  0.660 -0.612 "..., 4096) = 4096
write(9, "920  -4.087  -5.193          0.0"..., 4096) = 4096
write(9, "3  -1.564  -1.458  -1.748       "..., 4096) = 4096
write(9, "\n     D   363   361 3   364     "..., 4096) = 4096
write(9, "ATL  105 ]\n    ML   398   397 3 "..., 4096) = 4096
write(9, "000  0.000  0.000 \n\t\t\t\t[ MATP  1"..., 4096) = 4096
write(9, " -0.001                         "..., 4096) = 4096
write(9, "       0.000  0.000  0.000  0.00"..., 4096) = 4096
write(9, "649  -6.162  -0.021             "..., 4096) = 4096
write(9, "2 -3.397 -1.054 \n     D   578   "..., 4096) = 4096
write(9, "  3 -10.691  -0.856  -1.162     "..., 4096) = 4096
close(8)                                = 0
munmap(0x2aaaaaaac000, 4096)            = 0
write(9, "408  -0.496  -5.920  -4.087  -5."..., 2190) = 2190
close(9)                                = 0
munmap(0x2aaaaaaad000, 4096)            = 0
rt_sigprocmask(SIG_BLOCK, [INT], NULL, 8) = 0
unlink("cmfile")                        = 0
rename("cmfile.xxx", "cmfile")          = 0
rt_sigprocmask(SIG_UNBLOCK, [INT], NULL, 8) = 0
write(1, "#\n# CPU time: 620657.39u 40.71s "..., 64) = 64
exit_group(0)                           = ?
Process 3551 detached
[root@dual275 ~]# 

[Michael H.W. Weber]

Ok, guys, fasten your seat belts: as noted in our NEWS section, the last two CMS work packets alone returned about 900,000 results with a total traffic of 1 TB.

The upcoming weekend will bring new work, I guess.

Michael.

[LAURENU2]

Ok, guys, fasten your seat belts: as noted in our NEWS section,
Michael.

With this new work can I go back to Full Power Without impacting your server like I did last time?
40% power is No Fun

Have you Beefed up you DB to do Better then it did ?

[Michael H.W. Weber]

Well, the upcoming CMC WUs, even those of the "monster type" should run smoothly now. Although they still do run long. At least we have extended the deadline for these by a whole week. Concerning the upcoming CMS work, we will first send out a small batch to see how it is doing.

Michael.

[LAURENU2]

So I guess that means hold at a 40% commit mark

[Michael H.W. Weber]

New CMCs for Windows x64 have been fed into the server and will be delivered today. We expect these to run without complications unlike some WUs we delivered to Linux x64 a few weeks ago.
Note that the CMS packets coming up tomorrow will require broadband internet connection. Transfer volumes will be one to two orders of magnitude higher for some WUs compared what you are used to. Computation times will range between a few minutes to up to 100 hrs on a 955 BE (3 GHz). The human genome will also be analyzed.

Michael.